Magento to Shopify Migration Checklist: A Step-by-Step Guide for a Smooth Replatform

Neetika M
April 20, 2025
Share article
Get higher conversions with Checkout Wiz
Transform your Shopify Checkout with Custom Blocks, Upsell Widgets, Surveys and Full Branding Control
Available on Thank You Page
Available on Order Status Page
Get Started
Thank you, we'll get back to you!
Oops! try again
B
o
o
k
 
a
 
D
i
s
c
o
v
e
r
y
 
C
a
l
l
We got you! Book a call
with us
Oops! try again
Book a Discovery Call
Get higher conversions with Checkout Wiz
Get higher conversions with Checkout Wiz
Available on Thank You Page
Available on Order Status Page

Magento to Shopify Migration

Thinking about moving your store from Magento to Shopify?

You're not alone. Thousands of DTC brands and retailers are making the switch to Shopify — especially Shopify Plus — for a simpler, scalable, and more conversion-optimized platform.

But let’s be real — migrations can be messy. Between SEO drops, broken URLs, data loss, and downtime, one wrong move could hurt your store’s performance.

That’s why we’ve created this step-by-step Magento to Shopify migration checklist — to help you plan, execute, and optimize your replatforming journey without losing traffic or sales.

Whether you’re doing it yourself, working with a Shopify agency, or partnering with a Shopify Plus expert, this guide covers what you need to know.

Why Migrate from Magento to Shopify?

  • Lower Total Cost of Ownership: No server headaches, no hidden maintenance costs.
  • Faster Time-to-Market: Shopify’s drag-and-drop builder and prebuilt themes speed up launch.
  • App Ecosystem: 8,000+ apps (like ours at Skai Lama) let you customize without complex code.
  • Shopify Plus Advantages: Automation, robust APIs, and dedicated support for high-growth brands.

Pre-Migration Planning

Back Up Your Magento Store

Before doing anything else, take a full backup of your Magento store — including database, product files, media, and theme assets.

Audit Existing Store Data

Clean up broken links, remove outdated products, and identify which data should or shouldn’t be migrated (e.g., customer passwords cannot be moved directly to Shopify).

Set Clear Migration Goals

Define what success looks like:

  • Preserve SEO rankings?
  • Improve mobile UX?
  • Launch a refreshed design?
No items found.

Magento to Shopify Migration Checklist

Successfully migrating from Magento to Shopify requires planning, precision, and testing. Below is your step-by-step checklist — expanded with helpful context, tools, and tips.

1. Choose the Right Shopify Plan

Before anything else, pick a Shopify plan that matches your business size and needs:

  • Shopify Basic/Standard – Best for new/small stores
  • Shopify Advanced – Good for growing businesses needing reporting
  • Shopify Plus – Ideal for enterprise/DTC brands scaling fast

💡 Bonus: Shopify Plus gives you advanced checkout control, powerful automation, and access to Launchpad, Shopify Flow, and B2B features.

2. Set Up Your Shopify Store

Start building the foundation of your new home:

  • Add your store name, domain, and logo
  • Choose a Shopify theme (free or premium)
  • Set language and currency
  • Configure general settings (locations, shipping origin, etc.)

🛠 Need custom design or setup? Work with a Shopify Plus agency or use Shopify Experts.

3. Export Data from Magento

Use Magento’s admin panel or a migration tool like Matrixify to export:

  • Products (with SKUs, variants, inventory)
  • Customers (with order history, emails)
  • Orders
  • Categories and tags
  • Reviews (with timestamps and ratings)
  • Coupons, gift codes
Pro Tip: Clean up your Magento data before exporting to avoid bringing over outdated products or unused tags.

4. Import Data into Shopify

There are multiple ways to bring data into Shopify:

  • Shopify’s Store Import App for basic migrations
  • Matrixify for large-scale or custom imports
  • Shopify Plus merchants can request support from their dedicated launch engineers

🎯 Double-check:

  • Product images appear correctly
  • Variants and pricing match
  • Customer emails imported properly
  • Order statuses preserved

5. Rebuild Your Theme and Storefront

Magento themes aren’t compatible with Shopify, so this is a great time for a fresh look.

Options:

  • Use Shopify's Theme Store (free or paid)
  • Work with a Shopify Plus agency to build a custom storefront
  • Use drag-and-drop builders like PageFly or Shogun

✨ Enhance your UX:

  • Include product quizzes using Byte
  • Enable gift options with GiftLab
  • Promote bundles via Fly Bundles
This is your chance to rebrand. Want to optimize the UX too?
Here’s how to streamline Shopify checkout with custom fields.

6. Migrate Pages, Blogs, and Reviews

Don’t forget to move your non-product content!

  • About Us, Contact, Privacy, Return Policy pages
  • Blog posts (manually or with content migration tools)
  • Product reviews using tools like Judge.me, Yotpo, or Loox

🧩 Shopify Plus brands can preserve structured content more easily through custom scripts.

7. Set Up 301 Redirects

This step is CRUCIAL for SEO. You need to:

  • Map old Magento URLs to your new Shopify URLs
  • Use Shopify’s “URL Redirects” feature to create 301s
  • Test a sample of redirects to ensure they're working
📉 Without redirects, your traffic and backlinks could drop significantly after launch.

8. Configure Payments, Shipping, and Taxes

Go live-ready by completing:

  • Shopify Payments or integrate Stripe, PayPal, Shop pay etc.
  • Shipping zones (domestic and international)
  • Tax settings based on location and product type
🧠 Pro Tip: If you were using custom tax rules in Magento, verify Shopify's automatic tax calculations cover your regions.

9. Install Essential Shopify Apps

Time to power up your store with apps that replicate or improve your Magento workflows.

🚀 Recommended Apps from Skai Lama:

  • Fly Bundles – Create product sets like “frequently bought together” or “build your own box”
  • Checkout Wiz – Customize checkout flow and add upsells
  • Giftkart – Launch store credits, cashbacks, and gift cards
  • GiftLab – Enable gift wrapping, personal messages, and scheduled delivery
  • Kite – Offer free gifts or auto-applied discounts on certain products
  • Byte – Create engaging product quizzes for better personalization
  • Easy Bundles to create customizable bundles
🧩 Choose apps that support your AOV, conversion, and customer retention goals.

10. Test Everything Thoroughly

Before flipping the switch, simulate a live shopping experience:

  • Add to cart, checkout, and complete a real purchase (you can refund later)
  • Test discount codes, payment gateways, and shipping rates
  • Preview your site on mobile, tablet, and desktop
  • Check page speed using PageSpeed Insights
📋 Consider using Shopify’s Bogus Gateway to test payments safely.

11. Launch and Notify Your Audience

You're live — now tell the world!

  • Send out email campaigns (Klaviyo, Mailchimp, etc.)
  • Update social media links and bio URLs
  • Add an announcement bar or pop-up on your site
  • Notify your customer base if any functionality changed
💬 Use Giftkart or GiftLab to offer a “We’ve moved!” gift card or personalized gift to loyal customers.

Magento to Shopify SEO Checklist

Migrating platforms without an SEO strategy is like moving houses and not telling your mailman. You risk losing visibility, rankings, and ultimately, sales.

To avoid these costly mistakes, follow this SEO migration protocol:

Map and Redirect All Legacy URLs

Use a URL mapping sheet to match old Magento URLs with their new Shopify equivalents. Then set up 301 redirects inside Shopify to point search engines and users to the correct pages.

  • Use Shopify’s built-in URL Redirect Manager
  • Prioritize high-traffic pages (check in GA or Search Console)
  • Redirect categories, products, blogs, CMS pages

🛠 Pro Tip: Shopify Plus stores can use custom routing rules and server-level redirects for advanced use cases.

Retain Metadata Wherever Possible

SEO-friendly page titles, descriptions, alt text, and headers should be manually carried over or scripted via import.

  • Use Matrixify to bulk-edit and import metadata
  • Copy Magento meta titles/descriptions exactly, unless they were poorly optimized
Need tools? Explore the best Shopify SEO apps for 2025.

Set Up Google Search Console & Analytics

Immediately verify your new Shopify domain in Google Search Console to start tracking:

  • Indexation issues
  • Crawl errors
  • Keyword performance drops

Also, integrate Google Analytics 4 and enable eCommerce tracking to monitor:

  • Traffic recovery
  • Funnel drop-offs
  • Conversion rate performance

🧠 Don't forget to exclude your IP address from GA data to avoid skewed stats during Shopify a/b testing.

Submit an Updated Sitemap

Shopify auto-generates a sitemap.xml, available at yourstore.com/sitemap.xml.

  • Submit it to Google Search Console
  • Remove your old Magento sitemap if hosted externally
  • Monitor the “Coverage” tab for indexed vs non-indexed pages

Monitor Crawl Errors & SEO Health

Post-launch, check Google Search Console daily for:

  • 404 errors (from missed redirects)
  • Blocked resources (CSS/JS)
  • Mobile usability issues
  • Drop in clicks or impressions

🛡 Want full peace of mind? Skai Lama partners with Shopify Plus SEO agencies that handle technical audits, schema setup, and Google Analytics migration.

🛠 Post-Migration Checklist

Once your store is live, the work isn’t over. This is where you optimize.

✅ Monitor Site Speed & UX

Use:

  • Google PageSpeed Insights or Lighthouse to check page load
  • Shopify’s admin analytics to track checkout drop-offs and bounce rates

💡 Consider replacing heavy themes or unused apps that may affect speed.

✅ Run Post-Purchase Surveys (with Byte)

Understand the new customer experience by asking:

  • "How easy was the checkout?"
  • "What nearly stopped you from purchasing?"
  • "How did you find us?"

Use Byte to launch engaging, mobile-optimized surveys right after checkout or via email.

✅ Re-engage with Giftkart-powered loyalty campaigns

Reassure returning customers with a small "thank you" for their patience post-migration.

  • Use Giftkart to send store credit to loyal customers
  • Set automated campaigns based on order history
  • Launch a "We’ve Moved!" offer to re-engage cold segments

✅ Segment & Re-engage Customers

Review newly imported customer data in Shopify:

  • Tag by last purchase date
  • Filter by product interest or location
  • Identify lapsed customers from Magento era

🎯 Use this data to launch personalized campaigns using Klaviyo or Omnisend — and boost conversions with Kite’s custom discount rules or Fly Bundles for product combos.

🧰 Migration Tools

👨‍🔧 DIY Migration Tools:

  • Shopify Store Import App – Built-in tool for importing basic product and customer data
  • Matrixify – Powerful app for complex data migrations, bulk edits, and SEO fields
  • Rewind – Backup and version control for data, especially valuable during big changes

🤝 Full-Service Option: Work with a Shopify Plus Agency

For stores with:

  • Large catalogs
  • Custom business logic
  • International selling
  • Subscription models
  • High SEO dependency

…a Shopify Plus agency ensures nothing breaks during migration.

🎯 Skai Lama collaborates with top Shopify Plus agencies to offer:

  • Data migration strategy
  • SEO audits
  • Design & UX upgrades
  • App stack consulting
  • Custom checkout setups using Checkout Wiz

This partnership ensures your replatforming isn’t just a switch — it’s a full upgrade.

🎯 Conclusion

Migrating from Magento to Shopify can feel like a big leap — but with the right strategy, tools, and support, it can be one of the best decisions for your brand’s growth.

Whether you’re looking to reduce complexity, improve speed-to-market, or tap into Shopify’s powerful ecosystem, a well-executed migration protects your SEO, preserves your data, and sets your store up for scale.

By following this checklist and using trusted tools like Matrixify, Giftkart, and Byte, you can avoid common pitfalls and launch with confidence.

And if you’d rather not go it alone, consider working with a Shopify Plus agency like our partners at Skai Lama — we help brands like yours replatform smoothly, with a focus on growth, not just migration.

Rushy Scarcity Countdown Timer

Free to install
Built for Shopify

Hurrify customers to buy within a given timeframe with a sales countdown timer & improve conversions

Another popular Shopify checkout app is Checkout Promotions. The app comes with the ability to leverage a collection of highly robust visibility rules that help show customers one-click post purchase upsell promotions after an order payment has been made. Some of its key features include:

Features

AI recommended and manual recommendations for upselling.

Complete branding control.

Checkout Upsell for increasing AOV.

AI recommended and manual recommendations for upselling.

Pricing

Development

Free

Monthly Plan

$99/ month

Plus Plan

$99/ month

Plus Plan

$99/ month

FAQ: Magento to Shopify Migration

1. How do I migrate from Magento to Shopify?
2. Should I migrate from Magento to Shopify?
3. How do I migrate to Shopify without losing SEO?
4. What are the risks of migrating to Shopify?
5. What Shopify apps help after migrating from Magento?
6. How long does Magento to Shopify migration take?
Neetika M

Neetika M

Neetika is the founder of Skai Lama. Passionate about building SaaS, Product Development, and Marketing, she talks about eCommerce Growth, Product Bundling, Gifting, Retention, and Shopify.
Get higher conversions with Checkout Wiz
Get higher conversions with Checkout Wiz
Transform your Shopify Checkout with Custom Blocks, Upsell Widgets, Surveys and Full Branding Control
Available on Thank You Page
Available on Order Status Page
Supercharge Sales: Free Gifts, Discounts, BUy X Get Y & BOGO Offers
Supercharge Sales: Free Gifts, Discounts, BUy X Get Y & BOGO Offers
All In One Free Gifts & Discount App. Customize easily and get 24/7 support.Try now to transform your store’s success!
All In One Free Gifts & Discount App. Customize easily and get 24/7 support.Try now to transform your store’s success!
We got you! Book a call
with us
Oops! try again
Book a Call
We got you! Book a call
with us
Oops! try again
Book a Call

Access practical strategies and execution tips, to set up your store for success.

View Guide